6D6V Replication date Apr 22, 2018
title Cryoem Structure Of Tetrahymena Telomerase With Telomeric Dn Angstrom Resolution
authors J.Jiang, Y.Wang, L.Susac, H.Chan, R.Basu, Z.H.Zhou, J.Feigon
compound source
Molecule: Telomerase Reverse Transcriptase
Chain: A
Synonym: Telomerase Catalytic Subunit,Telomerase Subunit P1
Ec: 2.7.7.49
 Organism_scientific: Tetrahymena Thermophila
Organism_taxid: 5911

Molecule: Telomerase-Associated Protein 82
Chain: D
Organism_scientific: Tetrahymena Thermophila
Organism_taxid: 5911

Molecule: Telomerase Holoenzyme Teb Heterotrimer Teb3 Subun
Chain: F
Organism_scientific: Tetrahymena Thermophila
Organism_taxid: 5911

Molecule: Telomerase Holoenzyme Teb2 Subunit
Chain: E
Organism_scientific: Tetrahymena Thermophila
Organism_taxid: 5911

Molecule: Rna (159-Mer)
Chain: B
Organism_scientific: Tetrahymena Thermophila
Organism_taxid: 5911

Molecule: Dna (5'- D(Pgptptpgpgpgpgptptpgpgpgpgptptpgpgpgpg
Chain: C
Engineered: Yes
Synthetic: Yes
Organism_scientific: Tetrahymena Thermophila
Organism_taxid: 5911

Molecule: Telomerase-Associated Protein 50
Chain: G
Organism_scientific: Tetrahymena Thermophila
Organism_taxid: 5911

Molecule: Telomerase Associated Protein P65
Chain: H
Organism_scientific: Tetrahymena Thermophila
Organism_taxid: 5911
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.80 Å
ligand ZN enzyme Transferase E.C.2.7.7.49 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


D


E


F


H


Primary referenceStructure of Telomerase with Telomeric DNA., Jiang J, Wang Y, Susac L, Chan H, Basu R, Zhou ZH, Feigon J, Cell. 2018 May 17;173(5):1179-1190.e13. doi: 10.1016/j.cell.2018.04.038. PMID:29775593
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (319 Kb) [Save to disk]
  • Biological Unit Coordinates (6d6v.pdb1.gz) 308 Kb
  • LPC: Ligand-Protein Contacts for 6D6V
  • CSU: Contacts of Structural Units for 6D6V
  • Retrieve 6D6V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6D6V from S2C, [Save to disk]
    • View 6D6V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6D6V
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6d6v_A] [6d6v_H] [6d6v_B] [6d6v_E] [6d6v_D] [6d6v_G] [6d6v_F] [6d6v_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6D6V
  • Community annotation for 6D6V at PDBWiki (http://pdbwiki.org)

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