6DCE	Structural Protein	date	May 05, 2018
title	X-Ray Structure Of Fip200 Claw Domain
authors	M.Y.Su, J.H.Hurley
compound		source
Molecule: Rb1-Inducible Coiled-Coil Protein 1 Chain: A Synonym: Fak Family Kinase-Interacting Protein Of 200 Kda,F Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rb1cc1, Kiaa0203, Rbicc Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)
symmetry	Space Group: C 2 2 21	R_factor 0.208 R_Free 0.241
crystal cell	length a length b length c angle alpha angle beta angle gamma 30.779 89.220 80.098 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.56 Å
ligand	MSE, SO4	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	FIP200 Claw Domain Binding to p62 Promotes Autophagosome Formation at Ubiquitin Condensates., Turco E, Witt M, Abert C, Bock-Bierbaum T, Su MY, Trapannone R, Sztacho M, Danieli A, Shi X, Zaffagnini G, Gamper A, Schuschnig M, Fracchiolla D, Bernklau D, Romanov J, Hartl M, Hurley JH, Daumke O, Martens S, Mol Cell. 2019 Feb 26. pii: S1097-2765(19)30055-3. doi:, 10.1016/j.molcel.2019.01.035. PMID:30853400

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (22 Kb) [Save to disk] Biological Unit Coordinates (6dce.pdb1.gz) 18 Kb LPC: Ligand-Protein Contacts for 6DCE CSU: Contacts of Structural Units for 6DCE Structure Factors (366 Kb) Retrieve 6DCE in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6DCE from S2C, [Save to disk]

View 6DCE in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6DCE

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6dce_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 6DCE

Community annotation for 6DCE at PDBWiki (http://pdbwiki.org)

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