6DFK Protein Binding date May 15, 2018
title Crystal Structure Of The 11s Subunit Of The Plasmodium Falci Proteasome, Pa28
authors S.C.Xie, R.D.Metcalfe, D.L.Gillett, L.Tilley, M.D.W.Griffin
compound source
Molecule: Subunit Of Proteaseome Activator Complex,Putative
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N
Engineered: Yes
 Organism_scientific: Plasmodium Falciparum
Organism_common: Isolate 3d7
Organism_taxid: 36329
Gene: Pf3d7_0907700
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 31 2 1
R_factor 0.182 R_Free 0.225
crystal
cell
length a length b length c angle alpha angle beta angle gamma
166.485 166.485 399.162 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.10 Å
ligand SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, N, K, E, B, H, M, C, D, I, G, L


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1130 Kb) [Save to disk]
  • Biological Unit Coordinates (6dfk.pdb1.gz) 560 Kb
  • Biological Unit Coordinates (6dfk.pdb2.gz) 561 Kb
  • LPC: Ligand-Protein Contacts for 6DFK
  • CSU: Contacts of Structural Units for 6DFK
  • Structure Factors (4779 Kb)
  • Retrieve 6DFK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6DFK from S2C, [Save to disk]
    • View 6DFK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6DFK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6dfk_C] [6dfk_F] [6dfk_M] [6dfk_E] [6dfk_H] [6dfk_B] [6dfk_D] [6dfk_A] [6dfk_N] [6dfk_K] [6dfk_I] [6dfk_L] [6dfk_J] [6dfk_G]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6DFK
  • Community annotation for 6DFK at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science