6DGD	PriA helicase bound to dsDNA of a DNA replication fork	date
authors	Satyshur, K.A., Windgassen, T.A., Keck, J.L.
compound		source
symmetry		R_factor R_Free 0.2899
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.82
ligand	SO4, ZN	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structure-specific DNA replication-fork recognition directs helicase and replication restart activities of the PriA helicase., Windgassen TA, Leroux M, Satyshur KA, Sandler SJ, Keck JL, Proc Natl Acad Sci U S A. 2018 Sep 10. pii: 1809842115. doi:, 10.1073/pnas.1809842115. PMID:30201718

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (247 Kb) [Save to disk] Biological Unit Coordinates (6dgd.pdb1.gz) 124 Kb Biological Unit Coordinates (6dgd.pdb2.gz) 120 Kb LPC: Ligand-Protein Contacts for 6DGD CSU: Contacts of Structural Units for 6DGD Structure Factors (1826 Kb) Retrieve 6DGD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6DGD from S2C, [Save to disk]

View 6DGD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6DGD

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute Fold representative 6dgd from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6dgd_B] [6dgd_Z] [6dgd_Y] [6dgd_W] [6dgd_X] [6dgd_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 6DGD

Community annotation for 6DGD at PDBWiki (http://pdbwiki.org)

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