6DHC Hydrolase date May 19, 2018
title X-Ray Structure Of Bace1 In Complex With A Bicyclic Isoxazol Carboxamide As The P3 Ligand
authors A.D.Mesecar, E.K.Lendy
compound source
Molecule: Beta-Secretase 1
Chain: A, B, C
Fragment: Residues 14-454
Synonym: Aspartyl Protease 2,Asp 2,Beta-Site Amyloid Precur Protein Cleaving Enzyme 1,Beta-Site App Cleaving Enzyme 1,M Membrane-Associated Aspartic Protease 2;
Ec: 3.4.23.46
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bace1, Bace, Kiaa1149
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.172 R_Free 0.218
crystal
cell
length a length b length c angle alpha angle beta angle gamma
81.987 103.322 100.959 90.00 102.98 90.00
method X-Ray Diffractionresolution 2.85 Å
ligand GHJ, GOL, SO4, URE enzyme Hydrolase E.C.3.4.23.46 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceDesign, synthesis, X-ray studies, and biological evaluation of novel BACE1 inhibitors with bicyclic isoxazoline carboxamides as the P3 ligand., Ghosh AK, Ghosh K, Brindisi M, Lendy EK, Yen YC, Kumaragurubaran N, Huang X, Tang J, Mesecar AD, Bioorg Med Chem Lett. 2018 Jun 26. pii: S0960-894X(18)30546-8. doi:, 10.1016/j.bmcl.2018.06.045. PMID:29970308
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (204 Kb) [Save to disk]
  • Biological Unit Coordinates (6dhc.pdb1.gz) 68 Kb
  • Biological Unit Coordinates (6dhc.pdb2.gz) 69 Kb
  • Biological Unit Coordinates (6dhc.pdb3.gz) 68 Kb
  • LPC: Ligand-Protein Contacts for 6DHC
  • CSU: Contacts of Structural Units for 6DHC
  • Structure Factors (1032 Kb)
  • Retrieve 6DHC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6DHC from S2C, [Save to disk]
  • View 6DHC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6DHC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6dhc_C] [6dhc_B] [6dhc_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6DHC
  • Community annotation for 6DHC at PDBWiki (http://pdbwiki.org)

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