6DID		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	BMA, MAN, NAG	enzyme
Gene Ontology	Chain Function Process Component A, G, F J, I, B
Primary reference	Electron-Microscopy-Based Epitope Mapping Defines Specificities of Polyclonal Antibodies Elicited during HIV-1 BG505 Envelope Trimer Immunization., Bianchi M, Turner HL, Nogal B, Cottrell CA, Oyen D, Pauthner M, Bastidas R, Nedellec R, McCoy LE, Wilson IA, Burton DR, Ward AB, Hangartner L, Immunity. 2018 Aug 21;49(2):288-300.e8. doi: 10.1016/j.immuni.2018.07.009. Epub, 2018 Aug 7. PMID:30097292

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (897 Kb) [Save to disk] Biological Unit Coordinates (6did.pdb1.gz) 878 Kb LPC: Ligand-Protein Contacts for 6DID CSU: Contacts of Structural Units for 6DID Retrieve 6DID in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6DID from S2C, [Save to disk]

View 6DID in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6did_A] [6did_B] [6did_C] [6did_D] [6did_E] [6did_F] [6did_G] [6did_H] [6did_I] [6did_J] [6did_K] [6did_L] SWISS-PROT database:

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