6DKS	Transcription Dna	date	May 30, 2018
title	Structure Of The Rbpj-Sharp-Dna Repressor Complex
authors	R.A.Kovall, B.D.Vanderwielen, Z.Yuan
compound		source
Molecule: Dna (5'-D(Apaptpcptptptpcpcpcpapcpap 3'); Chain: A, E Engineered: Yes		Synthetic: Yes Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090
Molecule: Dna (5'-D(Tptpapcptpgptpgpgpgpapapap 3'); Chain: B, F Engineered: Yes		Synthetic: Yes Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090
Molecule: Recombining Binding Protein Suppressor Of Hairles Chain: C, G Fragment: Residues 53-474 Synonym: J Kappa-Recombination Signal-Binding Protein,Rbp-J Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: Rbpj, Igkjrb1, Igkrsbp, Rbpsuh Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Maltosemaltodextrin-Binding Periplasmic Protein Chain: D, H Fragment: Residues 28-392 Synonym: Mmbp,Maltodextrin-Binding Protein,Maltose-Binding Mbp; Engineered: Yes		Organism_scientific: Escherichia Coli O157:H7 Organism_taxid: 83334 Gene: Male, Z5632, Ecs5017 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 1 21 1	R_factor 0.195 R_Free 0.228
crystal cell	length a length b length c angle alpha angle beta angle gamma 54.450 231.570 90.260 90.00 99.88 90.00
method	X-Ray Diffraction	resolution	2.78 Å
ligand	GLC	enzyme
Gene Ontology	Chain Function Process Component C, G H, D carbohydrate transmembrane t...

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (573 Kb) [Save to disk] Biological Unit Coordinates (6dks.pdb1.gz) 562 Kb Biological Unit Coordinates (6dks.pdb2.gz) 284 Kb Biological Unit Coordinates (6dks.pdb3.gz) 284 Kb LPC: Ligand-Protein Contacts for 6DKS CSU: Contacts of Structural Units for 6DKS Structure Factors (1879 Kb) Retrieve 6DKS in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6DKS from S2C, [Save to disk]

View 6DKS in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6DKS

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6dks_A] [6dks_E] [6dks_G] [6dks_F] [6dks_B] [6dks_H] [6dks_D] [6dks_C] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 6DKS

Community annotation for 6DKS at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---