6DNH Rna Binding Protein Rna date Jun 06, 2018
title Cryo-Em Structure Of Human Cpsf-160-Wdr33-Cpsf-30-Pas Rna Co 3.4 A Resolution
authors Y.Sun, Y.Zhang, K.Hamilton, T.Walz, L.Tong
compound source
Molecule: Cleavage And Polyadenylation Specificity Factor S
Chain: A
Synonym: Cleavage And Polyadenylation Specificity Factor 16 Subunit, Cpsf 160 Kda Subunit;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cpsf1, Cpsf160
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111

Molecule: Pre-Mrna 3' End Processing Protein Wdr33
Chain: B
Synonym: Wd Repeat-Containing Protein 33, Wd Repeat-Contain Protein Wdc146;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Wdr33, Wdc146
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111

Molecule: Cleavage And Polyadenylation Specificity Factor S
Chain: C
Synonym: Cleavage And Polyadenylation Specificity Factor 30 Subunit, Cpsf 30 Kda Subunit, Ns1 Effector Domain-Binding P Neb-1, No Arches Homolog;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cpsf4, Cpsf30, Nar, Neb1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Rna (5'-R(Papapupapapapc)-3')
Chain: E
Engineered: Yes
Synthetic: Yes
Organism_scientific: Simian Virus 40
Organism_taxid: 10633
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.40 Å
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A

  • mRNA cleavage and polyadenyl...
    • C


    Primary referenceMolecular basis for the recognition of the human AAUAAA polyadenylation signal., Sun Y, Zhang Y, Hamilton K, Manley JL, Shi Y, Walz T, Tong L, Proc Natl Acad Sci U S A. 2017 Dec 5. pii: 1718723115. doi:, 10.1073/pnas.1718723115. PMID:29208711
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (246 Kb) [Save to disk]
  • Biological Unit Coordinates (6dnh.pdb1.gz) 239 Kb
  • LPC: Ligand-Protein Contacts for 6DNH
  • CSU: Contacts of Structural Units for 6DNH
  • Retrieve 6DNH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6DNH from S2C, [Save to disk]
    • View 6DNH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6DNH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6dnh_E] [6dnh_B] [6dnh_A] [6dnh_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6DNH
  • Community annotation for 6DNH at PDBWiki (http://pdbwiki.org)

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