OCA Atlas for 6DUZ

6DUZ

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Gene
Ontology

Chain	Function	Process	Component
O, N, R, I, S, U, V, H, K, A, C, P, G, D, F, T, X, W, M, E, Q, L, B, J
u, s, v, b, l, f, Z, r, k, t, c, n, d, a, Y, j, e, m, g, o, q, h, i, p

Primary reference

Cryo-EM analysis of the T3S injectisome reveals the structure of the needle and open secretin., Hu J, Worrall LJ, Hong C, Vuckovic M, Atkinson CE, Caveney N, Yu Z, Strynadka NCJ, Nat Commun. 2018 Sep 21;9(1):3840. doi: 10.1038/s41467-018-06298-8. PMID:30242280

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1267 Kb) [Save to disk]

Biological Unit Coordinates (6duz.pdb1.gz) 1242 Kb

CSU: Contacts of Structural Units for 6DUZ

Retrieve 6DUZ in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 6DUZ from S2C, [Save to disk]

View 6DUZ in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6duz_A] [6duz_B] [6duz_C] [6duz_D] [6duz_E] [6duz_F] [6duz_G] [6duz_H] [6duz_I] [6duz_J] [6duz_K] [6duz_L] [6duz_M] [6duz_N] [6duz_O] [6duz_P] [6duz_Q] [6duz_R] [6duz_S] [6duz_T] [6duz_U] [6duz_V] [6duz_W] [6duz_X] [6duz_Y] [6duz_Z] [6duz_a] [6duz_b] [6duz_c] [6duz_d] [6duz_e] [6duz_f] [6duz_g] [6duz_h] [6duz_i] [6duz_j] [6duz_k] [6duz_l] [6duz_m] [6duz_n] [6duz_o] [6duz_p] [6duz_q] [6duz_r] [6duz_s] [6duz_t] [6duz_u] [6duz_v]

SWISS-PROT database:

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