6DVM date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand BTB, EDO, HBJ, K, ZN enzyme
Primary referenceHistone Deacetylase 6-Selective Inhibitors and the Influence of Capping Groups on Hydroxamate-Zinc Denticity., Porter NJ, Osko JD, Diedrich D, Kurz T, Hooker JM, Hansen FK, Christianson DW, J Med Chem. 2018 Aug 17. doi: 10.1021/acs.jmedchem.8b01013. PMID:30118224
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (272 Kb) [Save to disk]
  • Biological Unit Coordinates (6dvm.pdb1.gz) 68 Kb
  • Biological Unit Coordinates (6dvm.pdb2.gz) 70 Kb
  • Biological Unit Coordinates (6dvm.pdb3.gz) 71 Kb
  • Biological Unit Coordinates (6dvm.pdb4.gz) 71 Kb
  • LPC: Ligand-Protein Contacts for 6DVM
  • CSU: Contacts of Structural Units for 6DVM
  • Structure Factors (10026 Kb)
  • Retrieve 6DVM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6DVM from S2C, [Save to disk]
    • View 6DVM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6dvm_D] [6dvm_A] [6dvm_B] [6dvm_C]
  • SWISS-PROT database:

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022,2024
    Bioinformatics Unit
    Weizmann Institute of Science