6DX3 Hydrolase, Protein Binding date Jun 28, 2018
title Crystal Structure Of The Viral Otu Domain Protease From Tagg
authors J.V.Dzimianski, B.S.Beldon, C.M.Daczkowski, O.Y.Goodwin, S.D.Peg
compound source
Molecule: Rna-Dependent Rna Polymerase
Chain: A, B, C, D
Engineered: Yes
Organism_scientific: Taggert Virus
Organism_taxid: 487050
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor 0.227 R_Free 0.250
length a length b length c angle alpha angle beta angle gamma
47.163 60.948 66.501 64.95 89.84 84.31
method X-Ray Diffractionresolution 2.05 Å
ligand MG enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (240 Kb) [Save to disk]
  • Biological Unit Coordinates (6dx3.pdb1.gz) 59 Kb
  • Biological Unit Coordinates (6dx3.pdb2.gz) 60 Kb
  • Biological Unit Coordinates (6dx3.pdb3.gz) 60 Kb
  • Biological Unit Coordinates (6dx3.pdb4.gz) 60 Kb
  • LPC: Ligand-Protein Contacts for 6DX3
  • CSU: Contacts of Structural Units for 6DX3
  • Structure Factors (797 Kb)
  • Retrieve 6DX3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6DX3 from S2C, [Save to disk]
  • View 6DX3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6DX3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6dx3_A] [6dx3_B] [6dx3_C] [6dx3_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6DX3
  • Community annotation for 6DX3 at PDBWiki (http://pdbwiki.org)

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