6E4L Endocytosis date Jul 17, 2018
title The Structure Of The N-Terminal Domain Of Human Clathrin Hea (Ntd) In Complex With Es9
authors W.Dejonghe, I.Sharma, B.Denoo, S.D.Munck, H.Bulut, E.Mylle, M.Vasi Q.Lu, D.V.Savatin, K.Mishev, W.Nerinckx, A.Staes, A.Drozdzecki, D.Audenaert, A.Madder, J.Friml, D.V.Damme, K.Gevaert, V.Haucke, S.Savvides, J.Winne, E.Russinova
compound source
Molecule: Clathrin Heavy Chain 1
Chain: A
Synonym: Clathrin Heavy Chain On Chromosome 17,Clh-17
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cltc, Clh17, Cltcl2, Kiaa0034
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.188 R_Free 0.214
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.210 74.340 84.230 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand ACT, DMS, EDO, GOL, HRS enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDisruption of endocytosis through chemical inhibition of clathrin heavy chain function., Dejonghe W, Sharma I, Denoo B, De Munck S, Lu Q, Mishev K, Bulut H, Mylle E, De Rycke R, Vasileva M, Savatin DV, Nerinckx W, Staes A, Drozdzecki A, Audenaert D, Yperman K, Madder A, Friml J, Van Damme D, Gevaert K, Haucke V, Savvides SN, Winne J, Russinova E, Nat Chem Biol. 2019 Apr 22. pii: 10.1038/s41589-019-0262-1. doi:, 10.1038/s41589-019-0262-1. PMID:31011214
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (119 Kb) [Save to disk]
  • Biological Unit Coordinates (6e4l.pdb1.gz) 114 Kb
  • LPC: Ligand-Protein Contacts for 6E4L
  • CSU: Contacts of Structural Units for 6E4L
  • Structure Factors (467 Kb)
  • Retrieve 6E4L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6E4L from S2C, [Save to disk]
  • View 6E4L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6E4L
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6e4l_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6E4L
  • Community annotation for 6E4L at PDBWiki (http://pdbwiki.org)

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