6E6T Lyase Antibiotic date Jul 25, 2018
title Dieckmann Cyclase, Ncmc, Bound To Cerulenin
authors D.P.Cogan, S.K.Nair
compound source
Molecule: Ncmc
Chain: A, B
Engineered: Yes
 Organism_scientific: Saccharothrix Syringae
Organism_taxid: 103733
Atcc: 51364
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: P 41
R_factor 0.188 R_Free 0.218
crystal
cell
length a length b length c angle alpha angle beta angle gamma
80.269 80.269 77.743 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand HVV, SO4 enzyme
Primary referenceStructural Basis for Enzymatic Off-Loading of Hybrid Polyketides by Dieckmann Condensation., Cogan DP, Ly J, Nair SK, ACS Chem Biol. 2020 Oct 16;15(10):2783-2791. doi: 10.1021/acschembio.0c00579., Epub 2020 Oct 5. PMID:33017142
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (92 Kb) [Save to disk]
  • Biological Unit Coordinates (6e6t.pdb1.gz) 44 Kb
  • Biological Unit Coordinates (6e6t.pdb2.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 6E6T
  • CSU: Contacts of Structural Units for 6E6T
  • Structure Factors (2757 Kb)
  • Retrieve 6E6T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6E6T from S2C, [Save to disk]
    • View 6E6T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6E6T
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6e6t_A] [6e6t_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6E6T
  • Community annotation for 6E6T at PDBWiki (http://pdbwiki.org)

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