6E7P Membrane Protein date Jul 27, 2018
title Cryo-Em Structure Of Human Trpml1 With Pi35p2
authors P.Schmiege, X.Li
compound source
Molecule: Mucolipin-1
Chain: A, B, C, D
Synonym: Ml1,Mg-2,Mucolipidin,Transient Receptor Potential Mucolipin 1,Trpml1;
Engineered: Yes
Other_details: Pip=Pi(3,5)P2
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mcoln1, Ml4, Mstp080
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.50 Å
ligand HZ7 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • iron ion transmembrane trans...
  • ligand-gated calcium channel...


    • Primary referenceStructural basis for PtdInsP2-mediated human TRPML1 regulation., Fine M, Schmiege P, Li X, Nat Commun. 2018 Oct 10;9(1):4192. doi: 10.1038/s41467-018-06493-7. PMID:30305615
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (285 Kb) [Save to disk]
  • Biological Unit Coordinates (6e7p.pdb1.gz) 278 Kb
  • LPC: Ligand-Protein Contacts for 6E7P
  • CSU: Contacts of Structural Units for 6E7P
  • Retrieve 6E7P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6E7P from S2C, [Save to disk]
    • View 6E7P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6E7P
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6e7p_C] [6e7p_A] [6e7p_B] [6e7p_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6E7P
  • Community annotation for 6E7P at PDBWiki (http://pdbwiki.org)

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