6E87 Oxidoreductase date Jul 27, 2018
title Crystal Structure Of Ferrous Form Of The Crosslinked Human C Dioxygenase In The Anaerobic Condition
authors A.Liu, J.Li
compound source
Molecule: Cysteine Dioxygenase Type 1
Chain: A
Synonym: Cysteine Dioxygenase Type I, Cdo-I
Ec: 1.13.11.20
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdo1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 65
R_factor 0.171 R_Free 0.197
crystal
cell
length a length b length c angle alpha angle beta angle gamma
131.706 131.706 34.325 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.95 Å
ligand FE2, GOL, SO4 enzyme Oxidoreductase E.C.1.13.11.20 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceProbing the Tyr-Cys Cofactor Biogenesis in Cysteine Dioxygenase by the Genetic Incorporation of Fluorotyrosine., Li J, Koto T, Davis I, Liu A, Biochemistry. 2019 Apr 4. doi: 10.1021/acs.biochem.9b00006. PMID:30946568
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (6e87.pdb1.gz) 36 Kb
  • LPC: Ligand-Protein Contacts for 6E87
  • CSU: Contacts of Structural Units for 6E87
  • Structure Factors (165 Kb)
  • Retrieve 6E87 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6E87 from S2C, [Save to disk]
    • View 6E87 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6E87
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6e87_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6E87
  • Community annotation for 6E87 at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science