6EHO Protein Binding date Sep 14, 2017
title Dimer Of The Sortilin Vps10p Domain At Low Ph
authors S.S.Thirup, E.H.Quistgaard, D.Januliene, J.L.Andersen, J.A.Niels
compound source
Molecule: Sortilin
Chain: A
Synonym: 100 Kda Nt Receptor,Glycoprotein 95,Gp95,Neurotens Receptor 3,Ntr3;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sort1
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
symmetry Space Group: I 21 3
R_factor 0.232 R_Free 0.272
crystal
cell
length a length b length c angle alpha angle beta angle gamma
189.010 189.010 189.010 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.50 Å
ligand BMA, MAN, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • nerve growth factor receptor...


  • Primary referenceAcidic Environment Induces Dimerization and Ligand Binding Site Collapse in the Vps10p Domain of Sortilin., Januliene D, Andersen JL, Nielsen JA, Quistgaard EM, Hansen M, Strandbygaard D, Moeller A, Petersen CM, Madsen P, Thirup SS, Structure. 2017 Oct 12. pii: S0969-2126(17)30328-3. doi:, 10.1016/j.str.2017.09.015. PMID:29107483
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (226 Kb) [Save to disk]
  • Biological Unit Coordinates (6eho.pdb1.gz) 435 Kb
  • LPC: Ligand-Protein Contacts for 6EHO
  • CSU: Contacts of Structural Units for 6EHO
  • Structure Factors (122 Kb)
  • Retrieve 6EHO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6EHO from S2C, [Save to disk]
  • View 6EHO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
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  • Visual 3D analysis of 6EHO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6eho_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6EHO
  • Community annotation for 6EHO at PDBWiki (http://pdbwiki.org)

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