6EIF Transferase date Sep 19, 2017
title Dyrk1a In Complex With Xmd7-117
authors U.Rothweiler
compound source
Molecule: Dual Specificity Tyrosine-Phosphorylation-Regulat 1a;
Chain: A, B, C, D
Synonym: Dual Specificity Yak1-Related Kinase,Hp86,Protein Minibrain Homolog,Hmnb;
Ec: 2.7.12.1
Engineered: Yes
Other_details: Phosphotyrosine
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dyrk1a, Dyrk, Mnb, Mnbh
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.218 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.440 88.536 231.142 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.22 Å
ligand B5T, PTR enzyme Transferase E.C.2.7.12.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceNovel Scaffolds for Dual Specificity Tyrosine-Phosphorylation-Regulated Kinase (DYRK1A) Inhibitors., Czarna A, Wang J, Zelencova D, Liu Y, Deng X, Choi HG, Zhang T, Zhou W, Chang JW, Kildalsen H, Seternes OM, Gray NS, Engh RA, Rothweiler U, J Med Chem. 2018 Aug 23. doi: 10.1021/acs.jmedchem.7b01847. PMID:30095246
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (435 Kb) [Save to disk]
  • Biological Unit Coordinates (6eif.pdb1.gz) 113 Kb
  • Biological Unit Coordinates (6eif.pdb2.gz) 112 Kb
  • Biological Unit Coordinates (6eif.pdb3.gz) 104 Kb
  • Biological Unit Coordinates (6eif.pdb4.gz) 108 Kb
  • LPC: Ligand-Protein Contacts for 6EIF
  • CSU: Contacts of Structural Units for 6EIF
  • Structure Factors (752 Kb)
  • Retrieve 6EIF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6EIF from S2C, [Save to disk]
  • View 6EIF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6EIF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6eif_B] [6eif_A] [6eif_D] [6eif_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6EIF
  • Community annotation for 6EIF at PDBWiki (http://pdbwiki.org)

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