6EJ3 Peptide Binding Protein date Sep 20, 2017
title Bace1 Compound 23
authors P.Johansson
compound source
Molecule: Beta-Secretase 1
Chain: A
Synonym: Aspartyl Protease 2,Asp 2,Beta-Site Amyloid Precur Protein Cleaving Enzyme 1,Beta-Site App Cleaving Enzyme 1,M Membrane-Associated Aspartic Protease 2;
Ec: 3.4.23.46
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bace1, Bace, Kiaa1149
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 61 2 2
R_factor 0.194 R_Free 0.217
crystal
cell
length a length b length c angle alpha angle beta angle gamma
102.889 102.889 170.110 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.94 Å
ligand B7T enzyme Hydrolase E.C.3.4.23.46 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceToward beta-Secretase-1 Inhibitors with Improved Isoform Selectivity., Johansson P, Kaspersson K, Gurrell IK, Back E, Eketjall S, Scott CW, Cebers G, Thorne P, McKenzie MJ, Beaton H, Davey P, Kolmodin K, Holenz J, Duggan ME, Budd Haeberlein S, Burli RW, J Med Chem. 2018 Apr 10. doi: 10.1021/acs.jmedchem.7b01716. PMID:29617572
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (133 Kb) [Save to disk]
  • Biological Unit Coordinates (6ej3.pdb1.gz) 128 Kb
  • LPC: Ligand-Protein Contacts for 6EJ3
  • CSU: Contacts of Structural Units for 6EJ3
  • Structure Factors (1329 Kb)
  • Retrieve 6EJ3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6EJ3 from S2C, [Save to disk]
  • View 6EJ3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6EJ3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ej3_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6EJ3
  • Community annotation for 6EJ3 at PDBWiki (http://pdbwiki.org)

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