OCA Atlas for 6ERF

6ERF

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Gene
Ontology

Chain	Function	Process	Component
B, D, H, F
G, A, E, C

Primary reference

XLF and APLF bind Ku80 at two remote sites to ensure DNA repair by non-homologous end joining., Nemoz C, Ropars V, Frit P, Gontier A, Drevet P, Yu J, Guerois R, Pitois A, Comte A, Delteil C, Barboule N, Legrand P, Baconnais S, Yin Y, Tadi S, Barbet-Massin E, Berger I, Le Cam E, Modesti M, Rothenberg E, Calsou P, Charbonnier JB, Nat Struct Mol Biol. 2018 Oct;25(10):971-980. doi: 10.1038/s41594-018-0133-6., Epub 2018 Oct 5. PMID:30291363

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1515 Kb) [Save to disk]

Biological Unit Coordinates (6erf.pdb1.gz) 382 Kb

Biological Unit Coordinates (6erf.pdb2.gz) 381 Kb

Biological Unit Coordinates (6erf.pdb3.gz) 382 Kb

Biological Unit Coordinates (6erf.pdb4.gz) 386 Kb

CSU: Contacts of Structural Units for 6ERF

Structure Factors (4689 Kb)

Retrieve 6ERF in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 6ERF from S2C, [Save to disk]

View 6ERF in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6erf_A] [6erf_B] [6erf_C] [6erf_D] [6erf_E] [6erf_F] [6erf_G] [6erf_H] [6erf_I] [6erf_J] [6erf_K] [6erf_L] [6erf_M] [6erf_N] [6erf_O] [6erf_P] [6erf_Q] [6erf_R] [6erf_S] [6erf_T]

SWISS-PROT database:

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