6ERH Complex of XLF and heterodimer Ku bound to DNA date
authors Nemoz, C., Legrand, P., Ropars, V., Charbonnier, J.B.
compound source
symmetry
R_factor
R_Free 0.2520
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.80
ligand SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


Primary referenceXLF and APLF bind Ku80 at two remote sites to ensure DNA repair by non-homologous end joining., Nemoz C, Ropars V, Frit P, Gontier A, Drevet P, Yu J, Guerois R, Pitois A, Comte A, Delteil C, Barboule N, Legrand P, Baconnais S, Yin Y, Tadi S, Barbet-Massin E, Berger I, Le Cam E, Modesti M, Rothenberg E, Calsou P, Charbonnier JB, Nat Struct Mol Biol. 2018 Oct;25(10):971-980. doi: 10.1038/s41594-018-0133-6., Epub 2018 Oct 5. PMID:30291363
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (814 Kb) [Save to disk]
  • Biological Unit Coordinates (6erh.pdb1.gz) 408 Kb
  • Biological Unit Coordinates (6erh.pdb2.gz) 404 Kb
  • LPC: Ligand-Protein Contacts for 6ERH
  • CSU: Contacts of Structural Units for 6ERH
  • Structure Factors (2258 Kb)
  • Retrieve 6ERH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6ERH from S2C, [Save to disk]
  • View 6ERH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6ERH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6erh from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6erh_A] [6erh_D] [6erh_T] [6erh_F] [6erh_R] [6erh_B] [6erh_K] [6erh_C] [6erh_M] [6erh_O]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6ERH
  • Community annotation for 6ERH at PDBWiki (http://pdbwiki.org)

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