6ESF Nucleosome : Class 1 date
authors Bilokapic, S., Halic, M.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.70
Gene
Ontology
ChainFunctionProcessComponent
A, E


C, G


F, B


H, D


Primary referenceHistone octamer rearranges to adapt to DNA unwrapping., Bilokapic S, Strauss M, Halic M, Nat Struct Mol Biol. 2018 Jan;25(1):101-108. doi: 10.1038/s41594-017-0005-5. Epub, 2017 Dec 11. PMID:29323273
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (218 Kb) [Save to disk]
  • Biological Unit Coordinates (6esf.pdb1.gz) 213 Kb
  • CSU: Contacts of Structural Units for 6ESF
  • Retrieve 6ESF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6ESF from S2C, [Save to disk]
  • View 6ESF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6ESF
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6esf from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6esf_G] [6esf_B] [6esf_D] [6esf_I] [6esf_A] [6esf_F] [6esf_E] [6esf_J] [6esf_H] [6esf_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6ESF
  • Community annotation for 6ESF at PDBWiki (http://pdbwiki.org)

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