6EU9 Transcription date Oct 29, 2017
title Crystal Structure Of Platynereis Dumerilii Rar Ligand-Bindin In Complex With All-Trans Retinoic Acid
authors M.Handberg-Thorsager, J.Gutierrez-Mazariegos, S.T.Arold, E.K.Na P.Y.Bertucci, P.Germain, P.Tomancak, K.Pierzchalski, J.W.Jones, R.Albalat, M.A.Kane, W.Bourguet, V.Laudet, D.Arendt, M.Schubert
compound source
Molecule: Retinoic Acid Receptor
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Platynereis Dumerilii
Organism_taxid: 6359
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: C 1 2 1
R_factor 0.255 R_Free 0.300
crystal
cell
length a length b length c angle alpha angle beta angle gamma
187.410 68.150 95.080 90.00 100.75 90.00
method X-Ray Diffractionresolution 2.69 Å
ligand REA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceThe ancestral retinoic acid receptor was a low-affinity sensor triggering neuronal differentiation., Handberg-Thorsager M, Gutierrez-Mazariegos J, Arold ST, Kumar Nadendla E, Bertucci PY, Germain P, Tomancak P, Pierzchalski K, Jones JW, Albalat R, Kane MA, Bourguet W, Laudet V, Arendt D, Schubert M, Sci Adv. 2018 Feb 21;4(2):eaao1261. doi: 10.1126/sciadv.aao1261. eCollection 2018, Feb. PMID:29492455
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (152 Kb) [Save to disk]
  • Biological Unit Coordinates (6eu9.pdb1.gz) 73 Kb
  • Biological Unit Coordinates (6eu9.pdb2.gz) 76 Kb
  • LPC: Ligand-Protein Contacts for 6EU9
  • CSU: Contacts of Structural Units for 6EU9
  • Structure Factors (952 Kb)
  • Retrieve 6EU9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6EU9 from S2C, [Save to disk]
    • View 6EU9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6EU9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6eu9_B] [6eu9_A] [6eu9_C] [6eu9_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6EU9
  • Community annotation for 6EU9 at PDBWiki (http://pdbwiki.org)

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