6EWX Cell Invasion date Nov 06, 2017
title Structure Of Pragmin Pseudo-Kinase Reveals A Dimerization Me Regulate Protein Tyrosine Phosphorylation And Nuclear Trans
authors M.Gelin, F.Allemand, A.Fournet, G.Labesse
compound source
Molecule: Peak1-Related Kinase-Activating Pseudokinase 1
Chain: A, B
Synonym: Similar To Dna Segment,Chr 8,Erato Doi 82,Expresse (Predicted),Isoform Cra_a;
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Rat
Organism_taxid: 10116
Gene: Prag1, Pragmin, Rgd1311793_predicted, Rcg_43329
Expression_system: Escherichia Coli
Expression_system_taxid: 83333
Expression_system_strain: K12
Expression_system_plasmid: Pet28b
symmetry Space Group: C 1 2 1
R_factor 0.188 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
193.430 58.920 110.640 90.00 118.48 90.00
method X-Ray Diffractionresolution 2.77 Å
ligand SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDimerization of the Pragmin Pseudo-Kinase Regulates Protein Tyrosine Phosphorylation., Lecointre C, Simon V, Kerneur C, Allemand F, Fournet A, Montarras I, Pons JL, Gelin M, Brignatz C, Urbach S, Labesse G, Roche S, Structure. 2018 Apr 3;26(4):545-554.e4. doi: 10.1016/j.str.2018.01.017. Epub 2018, Mar 1. PMID:29503074
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (251 Kb) [Save to disk]
  • Biological Unit Coordinates (6ewx.pdb1.gz) 483 Kb
  • LPC: Ligand-Protein Contacts for 6EWX
  • CSU: Contacts of Structural Units for 6EWX
  • Structure Factors (605 Kb)
  • Retrieve 6EWX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6EWX from S2C, [Save to disk]
  • View 6EWX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6EWX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ewx_A] [6ewx_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6EWX
  • Community annotation for 6EWX at PDBWiki (http://pdbwiki.org)

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