6EY9 Chaperone date Nov 11, 2017
title Estimation Of Relative Drug-Target Residence Times By Random Acceleration Molecular Dynamics Simulation
authors D.Musil, M.Lehmann, H.P.Buchstaller
compound source
Molecule: Heat Shock Protein Hsp 90-Alpha
Chain: A
Synonym: Heat Shock 86 Kda,Hsp86,Lipopolysaccharide-Associa Protein 2,Lps-Associated Protein 2,Renal Carcinoma Antigen
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hsp90aa1, Hsp90a, Hspc1, Hspca
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 2 2 2
R_factor 0.194 R_Free 0.226
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.421 90.460 99.131 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand C4N, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceEstimation of drug-target residence times by tau -random acceleration molecular dynamics simulations., Kokh DB, Amaral M, Bomke J, Gradler U, Musil D, Buchstaller HP, Dreyer MK, Frech M, Lowinski M, Vallee F, Bianciotto M, Rak A, Wade RC, J Chem Theory Comput. 2018 May 16. doi: 10.1021/acs.jctc.8b00230. PMID:29768913
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk]
  • Biological Unit Coordinates (6ey9.pdb1.gz) 71 Kb
  • LPC: Ligand-Protein Contacts for 6EY9
  • CSU: Contacts of Structural Units for 6EY9
  • Structure Factors (397 Kb)
  • Retrieve 6EY9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6EY9 from S2C, [Save to disk]
  • View 6EY9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6EY9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ey9_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6EY9
  • Community annotation for 6EY9 at PDBWiki (http://pdbwiki.org)

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