6EYM Sugar Binding Protein date Nov 13, 2017
title Neutron Crystal Structure Of Perdeuterated Galectin-3c In Co Lactose
authors F.Manzoni, L.Coates, M.P.Blakeley, E.Oksanen, D.T.Logan
compound source
Molecule: Galectin-3
Chain: A
Fragment: Unp Residues 113-250
Synonym: Gal-3,35 Kda Lectin,Carbohydrate-Binding Protein 3 Galactose-Specific Lectin 3,Galactoside-Binding Protein,Gal Binding Protein,L-31,Laminin-Binding Protein,Lectin L-29,Ma Antigen;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lgals3, Mac2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.107 R_Free 0.125
crystal
cell
length a length b length c angle alpha angle beta angle gamma
37.010 58.360 63.820 90.00 90.00 90.00
method X-Ray Diffraction; Neutron Diffractionresolution 1.70 Å
ligand BGC, GAL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceElucidation of hydrogen bonding patterns in ligand-free, lactose- and glycerol-bound galectin-3C by neutron crystallography to guide drug design., Manzoni F, Wallerstein J, Schrader TE, Ostermann A, Coates L, Akke M, Blakeley MP, Oksanen E, Logan DT, J Med Chem. 2018 Apr 19. doi: 10.1021/acs.jmedchem.8b00081. PMID:29672051
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (117 Kb) [Save to disk]
  • Biological Unit Coordinates (6eym.pdb1.gz) 111 Kb
  • LPC: Ligand-Protein Contacts for 6EYM
  • CSU: Contacts of Structural Units for 6EYM
  • Structure Factors (2469 Kb)
  • Retrieve 6EYM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6EYM from S2C, [Save to disk]
  • View 6EYM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6EYM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6eym_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6EYM
  • Community annotation for 6EYM at PDBWiki (http://pdbwiki.org)

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