6EZ1 Dna Binding Protein date Nov 13, 2017
title Structure Of H. Salinarum Rosr (Vng0258) Grown From Nabr
authors B.Shaanan, N.Kutnowski
compound source
Molecule: Dna Binding Protein
Chain: A, B
Engineered: Yes
Other_details: Halophilic Winged-Helix-Turn-Helix Dna Bindi From H. Salinarum
 Organism_scientific: Halobacterium Salinarum (Strain Atcc 7 Jcm 11081 Nrc-1);
Organism_common: Halobacterium Halobium
Organism_taxid: 64091
Variant: Nrc-1
Gene: Vng_0258h
Expression_system: Haloferax Volcanii
Expression_system_taxid: 2246
Expression_system_vector_type: Plasmid
symmetry Space Group: P 1 21 1
R_factor 0.170 R_Free 0.209
crystal
cell
length a length b length c angle alpha angle beta angle gamma
40.884 71.139 41.719 90.00 110.33 90.00
method X-Ray Diffractionresolution 1.75 Å
ligand BR, SO4 enzyme
Primary referenceThe 3-D structure of VNG0258H/RosR - A haloarchaeal DNA-binding protein in its ionic shell., Kutnowski N, Shmuely H, Dahan I, Shmulevich F, Davidov G, Shahar A, Eichler J, Zarivach R, Shaanan B, J Struct Biol. 2018 Aug 12. pii: S1047-8477(18)30226-0. doi:, 10.1016/j.jsb.2018.08.008. PMID:30110657
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (122 Kb) [Save to disk]
  • Biological Unit Coordinates (6ez1.pdb1.gz) 113 Kb
  • LPC: Ligand-Protein Contacts for 6EZ1
  • CSU: Contacts of Structural Units for 6EZ1
  • Structure Factors (1234 Kb)
  • Retrieve 6EZ1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6EZ1 from S2C, [Save to disk]
    • View 6EZ1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6EZ1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ez1_B] [6ez1_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6EZ1
  • Community annotation for 6EZ1 at PDBWiki (http://pdbwiki.org)

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