6F09	Signaling Protein	date	Nov 17, 2017
title	Binary Complex Of 14-3-3 Zeta With Ubiquitin Specific Protea (Usp8) Pser718 Peptide
authors	F.Centorrino, A.Ballone, C.Ottmann, S.Guo, S.Leysen
compound		source
Molecule: 14-3-3 Protein Zetadelta Chain: P, Q, R, S Synonym: Protein Kinase C Inhibitor Protein 1,Kcip-1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ywhaz Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Ubiquitin Carboxyl-Terminal Hydrolase 8 Chain: A, B, C, D Synonym: Deubiquitinating Enzyme 8,Ubiquitin Isopeptidase Y Ubiquitin Thioesterase 8,Ubiquitin-Specific-Processing Prot Ec: 3.4.19.12 Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 1	R_factor 0.180 R_Free 0.225
crystal cell	length a length b length c angle alpha angle beta angle gamma 60.379 64.890 71.519 99.71 114.22 108.79
method	X-Ray Diffraction	resolution	1.59 Å
ligand	SEP	enzyme	Hydrolase E.C.3.4.19.12 BRENDA
Gene Ontology	Chain Function Process Component S, Q, R, P positive regulation of prote...
Primary reference	Biophysical and structural insight into the USP8/14-3-3 interaction., Centorrino F, Ballone A, Wolter M, Ottmann C, FEBS Lett. 2018 Feb 23. doi: 10.1002/1873-3468.13017. PMID:29473952

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (465 Kb) [Save to disk] Biological Unit Coordinates (6f09.pdb1.gz) 233 Kb Biological Unit Coordinates (6f09.pdb2.gz) 224 Kb Biological Unit Coordinates (6f09.pdb3.gz) 231 Kb Biological Unit Coordinates (6f09.pdb4.gz) 224 Kb LPC: Ligand-Protein Contacts for 6F09 CSU: Contacts of Structural Units for 6F09 Structure Factors (4685 Kb) Retrieve 6F09 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6F09 from S2C, [Save to disk]

View 6F09 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6F09

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6f09_A] [6f09_C] [6f09_P] [6f09_D] [6f09_S] [6f09_R] [6f09_Q] [6f09_B] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 6F09

Community annotation for 6F09 at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---