6F0T De Novo Protein date Nov 20, 2017
title Crystal Structure Of Pizza6-Sfw
authors H.Noguchi, E.De Zitter, L.Van Meervelt, A.R.D.Voet
compound source
Molecule: Pizza6-Sfw
Chain: A, B, C
Engineered: Yes
 Organism_scientific: Synthetic Construct
Organism_taxid: 32630
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor 0.192 R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
32.529 69.454 78.710 65.36 89.80 77.16
method X-Ray Diffractionresolution 1.74 Å
ligand GOL enzyme
Primary referenceDesign of tryptophan-containing mutants of the symmetrical Pizza protein for biophysical studies., Noguchi H, Mylemans B, De Zitter E, Van Meervelt L, Tame JRH, Voet A, Biochem Biophys Res Commun. 2018 Mar 18;497(4):1038-1042. doi:, 10.1016/j.bbrc.2018.02.168. Epub 2018 Feb 23. PMID:29481797
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (120 Kb) [Save to disk]
  • Biological Unit Coordinates (6f0t.pdb1.gz) 40 Kb
  • Biological Unit Coordinates (6f0t.pdb2.gz) 41 Kb
  • Biological Unit Coordinates (6f0t.pdb3.gz) 40 Kb
  • LPC: Ligand-Protein Contacts for 6F0T
  • CSU: Contacts of Structural Units for 6F0T
  • Structure Factors (1539 Kb)
  • Retrieve 6F0T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6F0T from S2C, [Save to disk]
    • View 6F0T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6F0T
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6f0t_C] [6f0t_A] [6f0t_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6F0T
  • Community annotation for 6F0T at PDBWiki (http://pdbwiki.org)

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