6F3T	Transcription	date	Nov 28, 2017
title	Crystal Structure Of The Human Taf5-Taf6-Taf9 Complex
authors	M.Haffke, I.Berger
compound		source
Molecule: Transcription Initiation Factor Tfiid Subunit 5 Chain: A, B, C, D Synonym: Transcription Initiation Factor Tfiid 100 Kda Subu Tafii100; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Taf5, Taf2d Expression_system: Unidentified Baculovirus Expression_system_taxid: 10469
Molecule: Transcription Initiation Factor Tfiid Subunit 6 Chain: E, G, I, K Synonym: Rna Polymerase II Tbp-Associated Factor Subunit E, Transcription Initiation Factor Tfiid 70 Kda Subunit,Tafii7 Transcription Initiation Factor Tfiid 80 Kda Subunit,Tafii8 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Taf6, Taf2e, Tafii70 Expression_system: Unidentified Baculovirus Expression_system_taxid: 10469
Molecule: Transcription Initiation Factor Tfiid Subunit 9 Chain: F, H, J, L Synonym: Rna Polymerase II Tbp-Associated Factor Subunit G, Transcription Initiation Factor Tfiid 31 Kda Subunit,Tafii3 Transcription Initiation Factor Tfiid 32 Kda Subunit,Tafii3 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Taf9, Taf2g, Tafii31 Expression_system: Unidentified Baculovirus Expression_system_taxid: 10469
symmetry	Space Group: I 2 3	R_factor 0.197 R_Free 0.220
crystal cell	length a length b length c angle alpha angle beta angle gamma 339.050 339.050 339.050 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	CL, SEP	enzyme
Gene Ontology	Chain Function Process Component F, J, H, L K, E, I, G
Primary reference	Chaperonin CCT checkpoint function in basal transcription factor TFIID assembly., Antonova SV, Haffke M, Corradini E, Mikuciunas M, Low TY, Signor L, van Es RM, Gupta K, Scheer E, Vos HR, Tora L, Heck AJR, Timmers HTM, Berger I, Nat Struct Mol Biol. 2018 Dec;25(12):1119-1127. doi: 10.1038/s41594-018-0156-z., Epub 2018 Dec 3. PMID:30510221

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1539 Kb) [Save to disk] Biological Unit Coordinates (6f3t.pdb1.gz) 387 Kb Biological Unit Coordinates (6f3t.pdb2.gz) 383 Kb Biological Unit Coordinates (6f3t.pdb3.gz) 385 Kb Biological Unit Coordinates (6f3t.pdb4.gz) 387 Kb LPC: Ligand-Protein Contacts for 6F3T CSU: Contacts of Structural Units for 6F3T Structure Factors (1923 Kb) Retrieve 6F3T in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6F3T from S2C, [Save to disk]

View 6F3T in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6F3T

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6f3t_K] [6f3t_J] [6f3t_A] [6f3t_F] [6f3t_G] [6f3t_I] [6f3t_C] [6f3t_H] [6f3t_D] [6f3t_L] [6f3t_E] [6f3t_B] SWISS-PROT database: Domain organization of by SWISSPFAM

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