6FCQ Lyase date Dec 21, 2017
title The X-Ray Structure Of Lytic Transglycosylase Slt Inactive M E503q From Pseudomonas Aeruginosa In Complex With Bulgecin
authors M.T.Batuecas, T.Dominguez-Gil, J.A.Hermoso
compound source
Molecule: Soluble Lytic Murein Transglycosylase
Chain: A
Fragment: Unp Residues 30-642
Ec: 4.2.2.-
Engineered: Yes
Mutation: Yes
Organism_scientific: Pseudomonas Aeruginosa
Organism_taxid: 287
Gene: Slt, Aoy09_04369, Pamh19_2049
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 63
R_factor 0.181 R_Free 0.217
crystal
cell
length a length b length c angle alpha angle beta angle gamma
165.715 165.715 55.884 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.10 Å
ligand BUL, GOL enzyme Lyase E.C.4.2.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceExolytic and endolytic turnover of peptidoglycan by lytic transglycosylase Slt of Pseudomonas aeruginosa., Lee M, Batuecas MT, Tomoshige S, Dominguez-Gil T, Mahasenan KV, Dik DA, Hesek D, Millan C, Uson I, Lastochkin E, Hermoso JA, Mobashery S, Proc Natl Acad Sci U S A. 2018 Apr 9. pii: 1801298115. doi:, 10.1073/pnas.1801298115. PMID:29632171
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (107 Kb) [Save to disk]
  • Biological Unit Coordinates (6fcq.pdb1.gz) 102 Kb
  • LPC: Ligand-Protein Contacts for 6FCQ
  • CSU: Contacts of Structural Units for 6FCQ
  • Structure Factors (463 Kb)
  • Retrieve 6FCQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6FCQ from S2C, [Save to disk]
  • View 6FCQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6FCQ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6fcq_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6FCQ
  • Community annotation for 6FCQ at PDBWiki (http://pdbwiki.org)

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