6FG4 Protein Fibril date Jan 09, 2018
title Crystal Structure Of The Amyloid-Like Iikvik Segment From Th Aureus Biofilm-Associated Psmalpha1
authors M.Landau, J.P.Colletier
compound source
Molecule: Phenol-Soluble Modulin Alpha 1 Peptide
Chain: A
Fragment: Amyloid Spine Segment Iikvik From Psmalpha1 (Resi Secreted By S. Aureus;
Synonym: Psm Alpha-1
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Staphylococcus Aureus
Organism_taxid: 1280
Other_details: Iikvik From Psmalpha1, Synthesized
symmetry Space Group: C 1 2 1
R_factor 0.159 R_Free 0.194
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.270 4.800 22.900 90.00 107.65 90.00
method X-Ray Diffractionresolution 1.10 Å
ligand SO4 enzyme
Primary referenceExtreme amyloid polymorphism in Staphylococcus aureus virulent PSMalpha peptides., Salinas N, Colletier JP, Moshe A, Landau M, Nat Commun. 2018 Aug 29;9(1):3512. doi: 10.1038/s41467-018-05490-0. PMID:30158633
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (7 Kb) [Save to disk]
  • Biological Unit Coordinates (6fg4.pdb1.gz) 11 Kb
  • LPC: Ligand-Protein Contacts for 6FG4
  • CSU: Contacts of Structural Units for 6FG4
  • Structure Factors (47 Kb)
  • Retrieve 6FG4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6FG4 from S2C, [Save to disk]
    • View 6FG4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6FG4
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6fg4_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6FG4
  • Community annotation for 6FG4 at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science