6FGY Hydrolase date Jan 11, 2018
title Crystal Structure Of Human Bace-1 In Complex With Amino-1,4- Compound 4
authors J.M.Rondeau, E.Bourgier
compound source
Molecule: Beta-Secretase 1
Chain: A
Synonym: Aspartyl Protease 2,Asp 2,Beta-Site Amyloid Precur Protein Cleaving Enzyme 1,Beta-Site App Cleaving Enzyme 1,M Membrane-Associated Aspartic Protease 2;
Ec: 3.4.23.46
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bace1, Bace, Kiaa1149
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet24
symmetry Space Group: P 21 21 21
R_factor 0.204 R_Free 0.226
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.056 76.738 104.214 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.54 Å
ligand D9W enzyme Hydrolase E.C.3.4.23.46 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiscovery of amino-1,4-oxazines as potent BACE-1 inhibitors., Veenstra SJ, Rueeger H, Voegtle M, Lueoend R, Holzer P, Hurth K, Tintelnot-Blomley M, Frederiksen M, Rondeau JM, Jacobson L, Staufenbiel M, Neumann U, Machauer R, Bioorg Med Chem Lett. 2018 May 3. pii: S0960-894X(18)30393-7. doi:, 10.1016/j.bmcl.2018.05.003. PMID:29764741
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk]
  • Biological Unit Coordinates (6fgy.pdb1.gz) 68 Kb
  • LPC: Ligand-Protein Contacts for 6FGY
  • CSU: Contacts of Structural Units for 6FGY
  • Structure Factors (444 Kb)
  • Retrieve 6FGY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6FGY from S2C, [Save to disk]
  • View 6FGY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6FGY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6fgy_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6FGY
  • Community annotation for 6FGY at PDBWiki (http://pdbwiki.org)

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