OCA Atlas for 6FN1

6FN1

Membrane Protein

date

Feb 02, 2018

title

Zosuquidar And Uic2 Fab Complex Of Human-Mouse Chimeric Abcb (Abcb1hm)

authors

A.Alam, K.P.Locher

compound

source

Molecule: Human-Mouse Chimeric Abcb1 (Abcbhm)
Chain: A
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek

Molecule: Uic2 Antigen Binding Fragment Light Chain
Chain: B
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Mus Musculus
Expression_system_common: House Mouse
Expression_system_taxid: 10090
Expression_system_cell_line: Hybridoma

Molecule: Uic2 Antigen Binding Fragment Heavy Chain
Chain: C
Engineered: Yes

symmetry

Space Group: P 1

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma
1.000	1.000	1.000	90.00	90.00	90.00

method

Electron Microscopy

resolution

3.58 Å

ligand

NAG, ZQU

enzyme

Gene
Ontology

Chain	Function	Process	Component
A

Primary reference

Structure of a zosuquidar and UIC2-bound human-mouse chimeric ABCB1., Alam A, Kung R, Kowal J, McLeod RA, Tremp N, Broude EV, Roninson IB, Stahlberg H, Locher KP, Proc Natl Acad Sci U S A. 2018 Feb 13. pii: 1717044115. doi:, 10.1073/pnas.1717044115. PMID:29440498

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (234 Kb) [Save to disk]

Biological Unit Coordinates (6fn1.pdb1.gz) 228 Kb

LPC: Ligand-Protein Contacts for 6FN1

CSU: Contacts of Structural Units for 6FN1

Retrieve 6FN1 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 6FN1 from S2C, [Save to disk]

View 6FN1 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6FN1

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6fn1_A] [6fn1_C] [6fn1_B]

SWISS-PROT database:

Domain organization of by SWISSPFAM

Other resources with information on 6FN1

Community annotation for 6FN1 at PDBWiki (http://pdbwiki.org)

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]