6FPB De Novo Protein date Feb 09, 2018
title Crystal Structure Of Anti-Mtfp1 Darpin 1238_g01 In Space Gro
authors R.P.Jakob, M.A.Vigano, D.Bieli, S.Matsuda, J.V.Schaefer, A.Pluckt M.Affolter, T.Maier
compound source
Molecule: Darpin 1238_g01
Chain: A
Engineered: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Xl1blue
Expression_system_plasmid: Pqiq
symmetry Space Group: I 4
R_factor 0.151 R_Free 0.175
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.224 66.224 77.913 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.62 Å
ligand CL enzyme
Primary referenceDARPins recognizing mTFP1 as novel reagents for in vitro and in vivo protein manipulations., Vigano MA, Bieli D, Schaefer JV, Jakob RP, Matsuda S, Maier T, Pluckthun A, Affolter M, Biol Open. 2018 Sep 20. pii: bio.036749. doi: 10.1242/bio.036749. PMID:30237292
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (6fpb.pdb1.gz) 76 Kb
  • LPC: Ligand-Protein Contacts for 6FPB
  • CSU: Contacts of Structural Units for 6FPB
  • Structure Factors (488 Kb)
  • Retrieve 6FPB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6FPB from S2C, [Save to disk]
  • View 6FPB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6FPB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6fpb_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6FPB
  • Community annotation for 6FPB at PDBWiki (http://pdbwiki.org)

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