6FQ6	Gene Regulation	date	Feb 13, 2018
title	Class 2 : Distorted Nucleosome
authors	S.Bilokapic, M.Halic
compound		source
Molecule: Histone H3 Chain: A, E Engineered: Yes		Organism_scientific: Xenopus Laevis Organism_taxid: 8355 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Histone H4 Chain: B, F Engineered: Yes		Organism_scientific: Xenopus Laevis Organism_common: African Clawed Frog Organism_taxid: 8355 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Histone H2a Chain: C, G Engineered: Yes		Organism_scientific: Xenopus Laevis Organism_common: African Clawed Frog Organism_taxid: 8355 Gene: Hist1h2aj, Loc494591 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Histone H2b Chain: D, H Engineered: Yes		Organism_scientific: Xenopus Laevis Organism_common: African Clawed Frog Organism_taxid: 8355 Gene: Xelaev_18032686mg Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Dna (147-Mer) Chain: I Engineered: Yes		Organism_scientific: Synthetic Construct Organism_taxid: 32630 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Dna (147-Mer) Chain: J Engineered: Yes		Organism_scientific: Synthetic Construct Organism_taxid: 32630 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 1.000 1.000 1.000 90.00 90.00 90.00
method	Electron Microscopy	resolution	4.00 Å
Gene Ontology	Chain Function Process Component A, E C, G F, B H, D
Primary reference	Structural rearrangements of the histone octamer translocate DNA., Bilokapic S, Strauss M, Halic M, Nat Commun. 2018 Apr 6;9(1):1330. doi: 10.1038/s41467-018-03677-z. PMID:29626188

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (216 Kb) [Save to disk] Biological Unit Coordinates (6fq6.pdb1.gz) 212 Kb CSU: Contacts of Structural Units for 6FQ6 Retrieve 6FQ6 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6FQ6 from S2C, [Save to disk]

View 6FQ6 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6FQ6

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6fq6_C] [6fq6_E] [6fq6_F] [6fq6_I] [6fq6_J] [6fq6_B] [6fq6_H] [6fq6_D] [6fq6_G] [6fq6_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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Community annotation for 6FQ6 at PDBWiki (http://pdbwiki.org)

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