6FUD Antifungal Protein date Feb 26, 2018
title Complex Of Rice Blast (Magnaporthe Oryzae) Effector Protein With The Hma Domain Of Pikm-1 From Rice (Oryza Sativa)
authors M.Franceschetti, J.C.De La Concepcion, M.J.Banfield
compound source
Molecule: Nbs-Lrr Class Disease Resistance Protein
Chain: A
Engineered: Yes
Organism_scientific: Oryza Sativa Subsp. Japonica
Organism_common: Rice
Organism_taxid: 39947
Gene: Pikm1-Ts, Pi-Km1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Avr-Pik Protein
Chain: B
Synonym: Avr-Pikm Protein
Engineered: Yes

Organism_scientific: Magnaporthe Oryzae
Organism_common: Rice Blast Fungus
Organism_taxid: 318829
Gene: Avr-Pik, Avr-Pikm
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.125 R_Free 0.162
crystal
cell
length a length b length c angle alpha angle beta angle gamma
30.070 54.440 46.640 90.00 104.43 90.00
method X-Ray Diffractionresolution 1.30 Å
Primary referencePolymorphic residues in rice NLRs expand binding and response to effectors of the blast pathogen., De la Concepcion JC, Franceschetti M, Maqbool A, Saitoh H, Terauchi R, Kamoun S, Banfield MJ, Nat Plants. 2018 Jul 9. pii: 10.1038/s41477-018-0194-x. doi:, 10.1038/s41477-018-0194-x. PMID:29988155
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk]
  • Biological Unit Coordinates (6fud.pdb1.gz) 58 Kb
  • CSU: Contacts of Structural Units for 6FUD
  • Structure Factors (524 Kb)
  • Retrieve 6FUD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6FUD from S2C, [Save to disk]
  • View 6FUD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6FUD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6fud_B] [6fud_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6FUD
  • Community annotation for 6FUD at PDBWiki (http://pdbwiki.org)

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