6FZS Transcription date Mar 15, 2018
title Crystal Structure Of Smad5-Mh1 Bound To The Ggcgc Site.
authors Z.Kaczmarska, J.A.Marquez, M.J.Macias
compound source
Molecule: Mothers Against Decapentaplegic Homolog 5
Chain: A, B
Synonym: Mothers Against Dpp Homolog 5,Jv5-1,Smad Family Me Hsmad5;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Smad5, Madh5
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'- D(Ptpgpcpapgpgpcpgpcpgpcpcptpgpcpa)-3');
Chain: C, D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.193 R_Free 0.241
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.764 73.374 89.188 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.31 Å
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (119 Kb) [Save to disk]
  • Biological Unit Coordinates (6fzs.pdb1.gz) 142 Kb
  • LPC: Ligand-Protein Contacts for 6FZS
  • CSU: Contacts of Structural Units for 6FZS
  • Structure Factors (545 Kb)
  • Retrieve 6FZS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6FZS from S2C, [Save to disk]
  • View 6FZS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6FZS
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6fzs_B] [6fzs_C] [6fzs_D] [6fzs_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6FZS
  • Community annotation for 6FZS at PDBWiki (http://pdbwiki.org)

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