6G0N Hydrolase date Mar 19, 2018
title Crystal Structure Of A Gh8 Catalytic Mutant Xylohexaose Comp Xylanase From Teredinibacter Turnerae
authors C.A.Fowler, G.J.Davies, P.H.Walton
compound source
Molecule: Glycoside Hydrolase Family 8 Domain Protein
Chain: A
Ec: 3.2.1.-
Engineered: Yes
 Organism_scientific: Teredinibacter Turnerae (Strain Atcc 3 T7901);
Organism_taxid: 377629
Strain: Atcc 39867 T7901
Gene: Tertu_4506
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.169 R_Free 0.199
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.973 79.694 88.010 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand GOL, XYP enzyme Hydrolase E.C.3.2.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure and function of a glycoside hydrolase family 8 endoxylanase from Teredinibacter turnerae., Fowler CA, Hemsworth GR, Cuskin F, Hart S, Turkenburg J, Gilbert HJ, Walton PH, Davies GJ, Acta Crystallogr D Struct Biol. 2018 Oct 1;74(Pt 10):946-955. doi:, 10.1107/S2059798318009737. Epub 2018 Oct 2. PMID:30289404
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk]
  • Biological Unit Coordinates (6g0n.pdb1.gz) 66 Kb
  • LPC: Ligand-Protein Contacts for 6G0N
  • CSU: Contacts of Structural Units for 6G0N
  • Structure Factors (1855 Kb)
  • Retrieve 6G0N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6G0N from S2C, [Save to disk]
    • View 6G0N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6G0N
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6g0n_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6G0N
  • Community annotation for 6G0N at PDBWiki (http://pdbwiki.org)

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