6G39 Transferase date Mar 24, 2018
title Crystal Structure Of Haspin F605y Mutant In Complex With 5- Iodotubercidin
authors C.Heroven, A.Chaikuad, C.Bountra, C.H.Arrowsmith, A.M.Edwards, S. Structural Genomics Consortium (Sgc)
compound source
Molecule: Serinethreonine-Protein Kinase Haspin
Chain: A
Synonym: Germ Cell-Specific Gene 2 Protein,H-Haspin,Haploid Cell-Specific Nuclear Protein Kinase;
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Haspin, Gsg2
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: R3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 21 21 21
R_factor 0.158 R_Free 0.175
crystal
cell
length a length b length c angle alpha angle beta angle gamma
78.820 78.990 79.540 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.45 Å
ligand 5ID, IOD, MRD, NA enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceHalogen-aromatic pi-interactions modulate inhibitor residence time., Heroven C, Georgi V, Ganotra GK, Brennan PE, Wolfreys F, Wade RC, Fernandez-Montalvan AE, Chaikuad A, Knapp S, Angew Chem Int Ed Engl. 2018 Mar 30. doi: 10.1002/anie.201801666. PMID:29601130
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (127 Kb) [Save to disk]
  • Biological Unit Coordinates (6g39.pdb1.gz) 121 Kb
  • LPC: Ligand-Protein Contacts for 6G39
  • CSU: Contacts of Structural Units for 6G39
  • Structure Factors (6166 Kb)
  • Retrieve 6G39 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6G39 from S2C, [Save to disk]
  • View 6G39 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6G39
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6g39_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6G39
  • Community annotation for 6G39 at PDBWiki (http://pdbwiki.org)

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