6G4P Hydrolase date Mar 28, 2018
title Non-Aged Form Of Torpedo Californica Acetylcholinesterase In Tabun Analog Nedpa Bound To Uncharged Reactivator 2
authors G.Santoni, E.De La Mora, J.De Souza, I.Silman, J.Sussman, R.Baati F.Nachon
compound source
Molecule: Acetylcholinesterase
Chain: A, B
Synonym: Ache
Ec: 3.1.1.7
Organism_scientific: Tetronarce Californica
Organism_common: Pacific Electric Ray
Organism_taxid: 7787
symmetry Space Group: P 21 21 21
R_factor 0.201 R_Free 0.277
crystal
cell
length a length b length c angle alpha angle beta angle gamma
91.510 106.560 150.200 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.83 Å
ligand CL, ELT, JDS, NAG, PG4 enzyme Hydrolase E.C.3.1.1.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • acetylcholine catabolic proc...

  • Primary referenceStructure-based optimization of non-quaternary reactivators of acetylcholinesterase inhibited by organophosphorus nerve agents., Santoni G, de Sousa J, De la Mora E, Dias J, Jean L, Sussman JL, Silman I, Renard PY, Brown RCD, Weik M, Baati R, Nachon F, J Med Chem. 2018 Aug 20. doi: 10.1021/acs.jmedchem.8b00592. PMID:30125110
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (362 Kb) [Save to disk]
  • Biological Unit Coordinates (6g4p.pdb1.gz) 355 Kb
  • LPC: Ligand-Protein Contacts for 6G4P
  • CSU: Contacts of Structural Units for 6G4P
  • Structure Factors (965 Kb)
  • Retrieve 6G4P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6G4P from S2C, [Save to disk]
  • View 6G4P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6G4P
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6g4p_A] [6g4p_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6G4P
  • Community annotation for 6G4P at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science