6G8W Protein Binding date Apr 10, 2018
title Crystal Structures Of The Single Pdz Domains From Grasp65 An Interaction With The Golgin Gm130
authors C.M.Jurk, Y.Roske, U.Heinemann
compound source
Molecule: Golgi Reassembly-Stacking Protein 1
Chain: A, B
Synonym: Golgi Peripheral Membrane Protein P65,Golgi Phosph 5,Golph5,Golgi Reassembly-Stacking Protein Of 65 Kda,Grasp6
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gorasp1, Golph5, Grasp65
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.186 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.825 82.613 49.220 90.00 110.82 90.00
method X-Ray Diffractionresolution 2.12 Å
ligand EDO enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (36 Kb) [Save to disk]
  • Biological Unit Coordinates (6g8w.pdb1.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 6G8W
  • CSU: Contacts of Structural Units for 6G8W
  • Structure Factors (88 Kb)
  • Retrieve 6G8W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6G8W from S2C, [Save to disk]
    • View 6G8W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6G8W
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6g8w_A] [6g8w_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6G8W
  • Community annotation for 6G8W at PDBWiki (http://pdbwiki.org)

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