6GA6 Membrane Protein date Apr 11, 2018
title Bacteriorhodopsin, 10 Ps State, Real-Space Refined Against 1 Extrapolated Map
authors G.Nass Kovacs, J.P.Colletier, M.L.Gruenbein, T.Stensitzki, A.Ba S.Carbajo, R.B.Doak, D.Ehrenberg, L.Foucar, R.Gasper, A.Gorel, M. M.Kloos, J.Koglin, J.Reinstein, C.M.Roome, R.Schlesinger, M.Seab R.L.Shoeman, M.Stricker, S.Boutet, S.Haacke, J.Heberle, T.Domrat I.Schlichting
compound source
Molecule: Bacteriorhodopsin
Chain: A
Synonym: Br,Bacterioopsin,Bo
Engineered: Yes
Organism_scientific: Halobacterium Salinarum (Strain Atcc 7 Jcm 11081 Nrc-1);
Organism_common: Halobacterium Halobium
Organism_taxid: 64091
Strain: Atcc 700922 Jcm 11081 Nrc-1
Gene: Bop, Vng_1467g
Expression_system: Halobacterium Salinarum
Expression_system_taxid: 2242
symmetry Space Group: P 63
R_factor 0.198 R_Free 0.216
length a length b length c angle alpha angle beta angle gamma
61.700 61.700 109.400 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.80 Å
ligand C14, D10, DD9, HP6, L2P, MYS, OCT, RET, TRD, UND enzyme
  • ion channel activity

  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk]
  • Biological Unit Coordinates (6ga6.pdb1.gz) 217 Kb
  • LPC: Ligand-Protein Contacts for 6GA6
  • CSU: Contacts of Structural Units for 6GA6
  • Structure Factors (292 Kb)
  • Retrieve 6GA6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6GA6 from S2C, [Save to disk]
  • View 6GA6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6GA6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6ga6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ga6_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6GA6
  • Community annotation for 6GA6 at PDBWiki (http://pdbwiki.org)

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