6GBK Hydrolase date Apr 15, 2018
title Repertoires Of Functionally Diverse Enzymes Through Computat Design At Epistatic Active-Site Positions
authors O.Khersonsky, R.Lipsh, Z.Avizemer, M.Goldsmith, Y.Ashani, H.Leade S.Rogotner, D.Trudeau, D.S.Tawfik, S.J.Fleishman
compound source
Molecule: Parathion Hydrolase
Chain: A, B
Synonym: Phosphotriesterase,Pte
Ec: 3.1.8.1
Engineered: Yes
 Organism_scientific: Brevundimonas Diminuta
Organism_common: Pseudomonas Diminuta
Organism_taxid: 293
Gene: Opd
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.182 R_Free 0.212
crystal
cell
length a length b length c angle alpha angle beta angle gamma
156.749 53.090 89.230 90.00 106.81 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand FMT, TRS, ZN enzyme Hydrolase E.C.3.1.8.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • aryldialkylphosphatase activ...


    • Primary referenceAutomated Design of Efficient and Functionally Diverse Enzyme Repertoires., Khersonsky O, Lipsh R, Avizemer Z, Ashani Y, Goldsmith M, Leader H, Dym O, Rogotner S, Trudeau DL, Prilusky J, Amengual-Rigo P, Guallar V, Tawfik DS, Fleishman SJ, Mol Cell. 2018 Oct 4;72(1):178-186.e5. doi: 10.1016/j.molcel.2018.08.033. Epub, 2018 Sep 27. PMID:30270109
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (111 Kb) [Save to disk]
  • Biological Unit Coordinates (6gbk.pdb1.gz) 104 Kb
  • LPC: Ligand-Protein Contacts for 6GBK
  • CSU: Contacts of Structural Units for 6GBK
  • Structure Factors (2592 Kb)
  • Retrieve 6GBK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6GBK from S2C, [Save to disk]
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    • Visual 3D analysis of 6GBK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6gbk_B] [6gbk_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6GBK
  • Community annotation for 6GBK at PDBWiki (http://pdbwiki.org)

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