6GCG Oxidoreductase date Apr 17, 2018
title Copper Nitrite Reductase From Achromobacter Cycloclastes: La Polymorph Dataset 15
authors A.Ebrahim, M.V.Appleby, D.Axford, J.Beale, T.Moreno-Chicano, D.A. R.W.Strange, R.L.Owen, M.A.Hough
compound source
Molecule: Copper-Containing Nitrite Reductase
Chain: A
Synonym: Cu-Nir
Ec: 1.7.2.1
Engineered: Yes
 Organism_scientific: Achromobacter Cycloclastes
Organism_taxid: 223
Gene: Nirk
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: P 21 3
R_factor 0.166 R_Free 0.205
crystal
cell
length a length b length c angle alpha angle beta angle gamma
97.989 97.989 97.989 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand CU enzyme Oxidoreductase E.C.1.7.2.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceResolving polymorphs and radiation-driven effects in microcrystals using fixed-target serial synchrotron crystallography., Ebrahim A, Appleby MV, Axford D, Beale J, Moreno-Chicano T, Sherrell DA, Strange RW, Hough MA, Owen RL, Acta Crystallogr D Struct Biol. 2019 Feb 1;75(Pt 2):151-159. doi:, 10.1107/S2059798318010240. Epub 2018 Nov 9. PMID:30821704
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk]
  • Biological Unit Coordinates (6gcg.pdb1.gz) 159 Kb
  • LPC: Ligand-Protein Contacts for 6GCG
  • CSU: Contacts of Structural Units for 6GCG
  • Structure Factors (257 Kb)
  • Retrieve 6GCG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6GCG from S2C, [Save to disk]
    • View 6GCG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6GCG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6gcg_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6GCG
  • Community annotation for 6GCG at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science