6GG5 Transferase date May 02, 2018
title Crystal Structure Of M2 Pyk In Complex With Tryptophan.
authors I.W.Mcnae, M.Yuan, M.D.Walkinshaw
compound source
Molecule: Pyruvate Kinase Pkm
Chain: A, B, C, D
Synonym: Cytosolic Thyroid Hormone-Binding Protein,Cthbp,Op Interacting Protein 3,Oip-3,Pyruvate Kinase 23,Pyruvate Ki Muscle Isozyme,Thyroid Hormone-Binding Protein 1,Thbp1,Tumo P58;
Ec: 2.7.1.40
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pkm, Oip3, Pk2, Pk3, Pkm2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.228 R_Free 0.265
crystal
cell
length a length b length c angle alpha angle beta angle gamma
96.880 70.576 168.502 90.00 106.02 90.00
method X-Ray Diffractionresolution 3.20 Å
ligand CSO, K, PO4, TRP enzyme Transferase E.C.2.7.1.40 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceAn allostatic mechanism for M2 pyruvate kinase as an amino-acid sensor., Yuan M, McNae IW, Chen Y, Blackburn EA, Wear MA, Michels PAM, Fothergill-Gilmore LA, Hupp T, Walkinshaw MD, Biochem J. 2018 May 10. pii: BCJ20180171. doi: 10.1042/BCJ20180171. PMID:29748232
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (580 Kb) [Save to disk]
  • Biological Unit Coordinates (6gg5.pdb1.gz) 572 Kb
  • LPC: Ligand-Protein Contacts for 6GG5
  • CSU: Contacts of Structural Units for 6GG5
  • Structure Factors (1083 Kb)
  • Retrieve 6GG5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6GG5 from S2C, [Save to disk]
  • View 6GG5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6GG5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6gg5_C] [6gg5_D] [6gg5_A] [6gg5_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6GG5
  • Community annotation for 6GG5 at PDBWiki (http://pdbwiki.org)

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