6GI7 Flavoprotein date May 10, 2018
title Crystal Structure Of Pentaerythritol Tetranitrate Reductase Mutant L25i
authors C.W.Levy
compound source
Molecule: Pentaerythritol Tetranitrate Reductase
Chain: A
Engineered: Yes
 Organism_scientific: Enterobacter Cloacae
Organism_taxid: 550
Gene: Onr
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.110 R_Free 0.139
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.760 70.530 89.310 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.30 Å
ligand ACT, FMN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNonequivalence of Second Sphere "Noncatalytic" Residues in Pentaerythritol Tetranitrate Reductase in Relation to Local Dynamics Linked to H-Transfer in Reactions with NADH and NADPH Coenzymes., Iorgu AI, Baxter NJ, Cliff MJ, Levy C, Waltho JP, Hay S, Scrutton NS, ACS Catal. 2018 Dec 7;8(12):11589-11599. doi: 10.1021/acscatal.8b02810. Epub 2018, Oct 26. PMID:31119061
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (194 Kb) [Save to disk]
  • Biological Unit Coordinates (6gi7.pdb1.gz) 188 Kb
  • LPC: Ligand-Protein Contacts for 6GI7
  • CSU: Contacts of Structural Units for 6GI7
  • Structure Factors (3647 Kb)
  • Retrieve 6GI7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6GI7 from S2C, [Save to disk]
    • View 6GI7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6GI7
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6gi7_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6GI7
  • Community annotation for 6GI7 at PDBWiki (http://pdbwiki.org)

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