6GIS Dna Binding Protein date May 15, 2018
title Structural Basis Of Human Clamp Sliding On Dna
authors M.De March, N.Merino, S.Barrera-Vilarmau, R.Crehuet, S.Onesti, F. A.De Biasio
compound source
Molecule: Proliferating Cell Nuclear Antigen
Chain: A, B, C
Synonym: Pcna,Cyclin
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pcna
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Dna (5'-D(Paptpapcpgpaptpgpgpg)-3')
Chain: D
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'-D(Pcpcpcpaptpcpgptpapt)-3')
Chain: E
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: H 3
R_factor 0.247 R_Free 0.284
crystal
cell
length a length b length c angle alpha angle beta angle gamma
180.189 180.189 76.832 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.82 Å
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceStructural basis of human PCNA sliding on DNA., De March M, Merino N, Barrera-Vilarmau S, Crehuet R, Onesti S, Blanco FJ, De Biasio A, Nat Commun. 2017 Jan 10;8:13935. doi: 10.1038/ncomms13935. PMID:28071730
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (243 Kb) [Save to disk]
  • Biological Unit Coordinates (6gis.pdb1.gz) 236 Kb
  • CSU: Contacts of Structural Units for 6GIS
  • Structure Factors (1041 Kb)
  • Retrieve 6GIS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6GIS from S2C, [Save to disk]
    • View 6GIS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6GIS
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6gis_A] [6gis_D] [6gis_C] [6gis_E] [6gis_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6GIS
  • Community annotation for 6GIS at PDBWiki (http://pdbwiki.org)

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