6GM3 Oxidoreductase date May 24, 2018
title [Fefe]-Hydrogenase Cpi From Clostridium Pasteurianum, Varian
authors J.Duan, J.Esselborn, E.Hofmann, M.Winkler, T.Happe
compound source
Molecule: Iron Hydrogenase 1
Chain: A, B
Fragment: Complete Enzyme
Synonym: Cpi,Fe-Only Hydrogenase,[Fe] Hydrogenase
Ec: 1.12.7.2
Engineered: Yes
Mutation: Yes
Organism_scientific: Clostridium Pasteurianum
Organism_taxid: 1501
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Discr
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21b
symmetry Space Group: P 1 21 1
R_factor 0.185 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
89.810 72.890 103.140 90.00 96.11 90.00
method X-Ray Diffractionresolution 2.22 Å
ligand 402, FES, MG, SF4 enzyme Oxidoreductase E.C.1.12.7.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • electron transfer activity


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (205 Kb) [Save to disk]
  • Biological Unit Coordinates (6gm3.pdb1.gz) 101 Kb
  • Biological Unit Coordinates (6gm3.pdb2.gz) 102 Kb
  • LPC: Ligand-Protein Contacts for 6GM3
  • CSU: Contacts of Structural Units for 6GM3
  • Structure Factors (557 Kb)
  • Retrieve 6GM3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6GM3 from S2C, [Save to disk]
  • View 6GM3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6GM3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6gm3_B] [6gm3_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6GM3
  • Community annotation for 6GM3 at PDBWiki (http://pdbwiki.org)

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