6GON Transport Protein date Jun 01, 2018
title Crystal Structure Of Sea Bream Transthyretin In Complex With Perfluorooctanoic Acid (Pfoa). Crystallized In Peg
authors C.Grundstrom, J.Zhang, A.Olofsson, P.L.Andersson, A.E.Sauer-Erik
compound source
Molecule: Transthyretin
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Sparus Aurata
Organism_common: Gilthead Sea Bream
Organism_taxid: 8175
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.159 R_Free 0.193
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.408 76.203 107.103 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.65 Å
ligand 8PF enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • hormone activity


    • Primary referenceInterspecies Variation Between Fish and Human Transthyretins in Their Binding of Thyroid-Disrupting Chemicals., Zhang J, Grundstrom C, Brannstrom K, Iakovleva I, Lindberg M, Olofsson A, Andersson PL, Sauer-Eriksson AE, Environ Sci Technol. 2018 Sep 18. doi: 10.1021/acs.est.8b03581. PMID:30226982
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (6gon.pdb1.gz) 88 Kb
  • LPC: Ligand-Protein Contacts for 6GON
  • CSU: Contacts of Structural Units for 6GON
  • Structure Factors (2812 Kb)
  • Retrieve 6GON in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6GON from S2C, [Save to disk]
    • View 6GON in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6GON
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6gon_A] [6gon_B] [6gon_C] [6gon_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6GON
  • Community annotation for 6GON at PDBWiki (http://pdbwiki.org)

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