6GQ5 Protein Fibril date Jun 07, 2018
title Crystal Structure Of The Psmalpha3 Peptide Mutant L15a Formi Alpha Amyloid-Like Fibril
authors M.Landau, E.Tayeb-Fligelman
compound source
Molecule: Phenol-Soluble Modulin Alpha 3 Peptide
Chain: A
Fragment: Psmalpha3 Full-Length Mutant (Residues 1-22)
Engineered: Yes
Mutation: Yes
Synthetic: Yes
Organism_scientific: Staphylococcus Aureus Rf122
Organism_taxid: 273036
Other_details: Psmalpha3 L15a Mutant, Synthesized
symmetry Space Group: P 1 21 1
R_factor 0.194 R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
28.410 10.670 29.600 90.00 105.87 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand MRD enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStaphylococcus aureus PSMalpha3 Cross-alpha Fibril Polymorphism and Determinants of Cytotoxicity., Tayeb-Fligelman E, Salinas N, Tabachnikov O, Landau M, Structure. 2020 Mar 3;28(3):301-313.e6. doi: 10.1016/j.str.2019.12.006. Epub 2020, Jan 6. PMID:31918959
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (8 Kb) [Save to disk]
  • Biological Unit Coordinates (6gq5.pdb1.gz) 25 Kb
  • LPC: Ligand-Protein Contacts for 6GQ5
  • CSU: Contacts of Structural Units for 6GQ5
  • Structure Factors (68 Kb)
  • Retrieve 6GQ5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6GQ5 from S2C, [Save to disk]
  • View 6GQ5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6GQ5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6gq5_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6GQ5
  • Community annotation for 6GQ5 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science